PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471868.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 254aa MW: 29997.2 Da PI: 6.7214

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.4	2.2e-26	143	192	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++l+++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl XP_016471868.1 143 DALELDEIQRYFHVPINKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 192 6799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	126	214	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-23	145	192	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDSHVLTLEN QNDQFDWLYS EHPPPPFGTW QHQDSRILSN GGLFNFEYFD PFQFPSDIQN 60 NHLPTFFDLK EFEEICQDLG TLDVKLPPFQ EEIPLNMTFT PLEECQNYVT STMISSGERE 120 IINGTNKELI RKRNNNGRHK KSDALELDEI QRYFHVPINK AAKELRVGLT VLKKRCRELN 180 IMRWPHRKIK SLQTLIDSVK EMGLTSEVEM LEEHQRMLEK VPEMELTERT KKLRQTCFKA 240 NYKKRRAAMA AFSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471868.1	0.0	PREDICTED: protein RKD4-like
TrEMBL	A0A1S4A5E2	0.0	A0A1S4A5E2_TOBAC; protein RKD4-like
STRING	XP_009589276.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-42	RWP-RK domain-containing protein