PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472191.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 171aa    MW: 19571.5 Da    PI: 9.4806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001384106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg+ F     L  H+r+H
  XP_016472191.1  84 HECSFCGEEFALGQALGGHMRKH 106
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.0E-836106No hitNo description
PfamPF139124.7E-113861IPR007087Zinc finger, C2H2
SMARTSM003550.583860IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2453865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-482107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.76484111IPR007087Zinc finger, C2H2
PfamPF139121.7E-884109IPR007087Zinc finger, C2H2
SMARTSM003550.1284106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MALKRSREEE TVSVEKLAMA NCVDIMKRNQ SKGRSKIFEC KTCKKQFDSF QALGGHRASH  60
KNTAIKLMLM STFPNELPGK PKKHECSFCG EEFALGQALG GHMRKHRDQL NQQQQYQYKK  120
KKVQEKSDVS DQEDGKEKKD LGSEGIFFLD LNLTPYENEL MAGIVPVRSW L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759207.11e-126PREDICTED: zinc finger protein ZAT8-like
RefseqXP_016472191.11e-126PREDICTED: zinc finger protein ZAT8-like
TrEMBLA0A1S4A6J91e-125A0A1S4A6J9_TOBAC; zinc finger protein ZAT8-like
TrEMBLA0A1U7UT091e-125A0A1U7UT09_NICSY; zinc finger protein ZAT8-like
STRINGXP_009759207.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-33C2H2 family protein