PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472308.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 273aa    MW: 30868.9 Da    PI: 4.518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-1199146355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+++ + f  L +++P +     kKl+K++iL  ++eY k+Lq
  XP_016472308.1  99 QEHVTAERKRREKMGELFISLSKVVPGL-----KKLDKSSILGDTIEYTKELQ 146
                     67999***********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.88896145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-899146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15100159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15100158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-10101150No hitNo description
SMARTSM003532.8E-12102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEYTGNFNDE DDFFLDVMQN FSQDIYSYSN IIEEKDQLKD LSSSPLKSSS GFLISFSSSQ  60
EEENIAIVKS HLEEINACQA FEGNNNNNIM YKRTPLQAQE HVTAERKRRE KMGELFISLS  120
KVVPGLKKLD KSSILGDTIE YTKELQQQVK ILEETKKNIP SACENINDSS SYNKNVNCID  180
DQVLGSKIKT RILDKNVLIN IHCNKQDGVV GRILFEMEQL HLSVNDIRIM PFGCTNLEIS  240
ILAEMENGCC ITVQDIVNAL QINILDQVQS AVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109ERKRRE
2105110RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768662.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016472308.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4A6N70.0A0A1S4A6N7_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7VKZ00.0A0A1U7VKZ0_NICSY; transcription factor bHLH18-like
STRINGXP_009768662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-32bHLH family protein