PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472343.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 791aa    MW: 90459.6 Da    PI: 5.8902
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1151.12.5e-47331493118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rw +++ei++iL n++k+ lt +++ rp+ gsl L++rk++ yf +DG++w+k  dgk+v+E hekLK g+ +vl+cyYah+e+n++fqr
  XP_016472343.1  33 QEaQHRWFRPDEICEILRNHQKFGLTPQPPLRPPGGSLYLFDRKVLPYFCEDGHQWRKEEDGKAVKEIHEKLKAGSNDVLHCYYAHGEDNENFQR 127
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Lee +e+i+lvhy+evk
  XP_016472343.1 128 RSYWMLEEPMEHIILVHYREVK 149
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143771.12628154IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-6531149IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4334147IPR005559CG-1 DNA-binding domain
SuperFamilySSF813831.31E-9368423IPR001810F-box domain
SMARTSM002563.1E-6368408IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.6E-4368404No hitNo description
PfamPF006461.6E-7368408IPR001810F-box domain
TIGRFAMsTIGR016402.0E-26509717IPR017451F-box associated interaction domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MKFEVFIFAP FLLVTDTGRY LYNKSLDVGQ ILQEAQHRWF RPDEICEILR NHQKFGLTPQ  60
PPLRPPGGSL YLFDRKVLPY FCEDGHQWRK EEDGKAVKEI HEKLKAGSND VLHCYYAHGE  120
DNENFQRRSY WMLEEPMEHI ILVHYREVKE GYIVGASCLQ PVHPGLLLEN PQSSSAPCFE  180
SDLIVQESHT STPSSVDWKE YVLSSELHSG HAKRNEADPL LVPAGLVESS RDSFQLNSRF  240
SSLLSGEVLE ENTHIAPPQI QNISISQTVV SPDTAVQISS LEGGVNSDEA GSLKKFDSYV  300
RWMDREKSRD CDESLMATKS GNYWNTLDTD NEGKSCNLSI QMEYERKRTD TQLPLAPFGH  360
SSFQYPFLSK DIITEILIRL PVKLIVKFRC VSKSWRALIT SPKFVKDHLR LALKNKAYHK  420
VMWCHRPQIK IEECYLSSLF DNSTTFSDVS ALHPRLVSDG LYTRVPDSIV VLGSVHGLIC  480
LIGSVDGCIF QGYDDIDTER LVDIEDFKED LFLWNPSTRR YKKLPDHKPD YWFDTRVYGL  540
GYDMLHDDYK FLGTFRGYQR LHCCKVQLYS LKSDSWKSLD DLPSALSGGN LQGVSGTFVE  600
GSLHWLSYTT DGPDKRWNII SFNLADEKWG TLEKPCYEEG ELVLWLGVIG SDLSLFVDCE  660
GTHIDVWVMQ KYAVQGSWNK KFIIKYPDGV GLTGFGPLFM LPYFFSITDE ILMLFNSTAN  720
IYNTRDEVWR PNPYVINWLD HPTAFIYVES LVSPFSAKGT EATRKNLLDV AADPTLPHTI  780
SVKCPQSDHK K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472343.10.0PREDICTED: uncharacterized protein LOC107794376
TrEMBLA0A1S4A6S00.0A0A1S4A6S0_TOBAC; uncharacterized protein LOC107794376
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14489811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.26e-59Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains