PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016472877.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 146aa MW: 16476.7 Da PI: 7.7657

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016472877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.5e-38	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d++ +l+yeA +r++dPvyG+vg+++ l++++ ql++++a XP_016472877.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSCVHRIYGASNVGKMLQQVQEHQRADVAGTLYYEAYCRIKDPVYGCVGIVTVLHEEIYQLQSQMA 99 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++e+ XP_016472877.1 100 KVQAEI 105 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.028	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSCVHRI YGASNVGKML QQVQEHQRAD 60 VAGTLYYEAY CRIKDPVYGC VGIVTVLHEE IYQLQSQMAK VQAEIDLHKA QSPVQGQQQV 120 EFSANSLADQ NGVYTSSPSL FDPSFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-36	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-36	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	9e-51	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472877.1	1e-106	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	3e-47	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1S4A8A9	1e-105	A0A1S4A8A9_TOBAC; LOB domain-containing protein 24-like
STRING	XP_009780781.1	1e-105	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-49	LOB domain-containing protein 24