PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016472938.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 241aa MW: 27363.5 Da PI: 6.7857

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016472938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.5	1.6e-33	54	107	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k +YkeClkNhA+s+GghavDGCgEfmp+ ge+g+ ++lkCaAC+CHRnFHR+ + XP_016472938.1 54 KPKYKECLKNHAVSIGGHAVDGCGEFMPA-GEDGSLDSLKCAACNCHRNFHRKIT 107 679***********************9.999*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-21	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.1E-31	56	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.0E-30	56	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.928	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.4E-30	167	240	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.99E-18	168	239	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.859	176	240	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	3.5E-25	178	235	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDFENHQEEE ETEPPPRHDD SLDNSNSTHP TKMPSPTPME LEPLAVVHTW HNNKPKYKEC 60 LKNHAVSIGG HAVDGCGEFM PAGEDGSLDS LKCAACNCHR NFHRKITQPP PNAVEPLPFV 120 NYHSSYYRSL PPPCGYLQYH VAPQQRPLAL PSTSGGGGYW EDQEDMSNLN NSGGSGSKKR 180 FRTKFSQEQK EKMQELADKL GWRIQREDEE LVQQLCNETG VRRQVFKVWM HNNKNTLGKK 240 P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-23	177	236	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769511.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Refseq	XP_016472938.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	8e-65	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q9SB61	1e-65	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1S4A8H1	0.0	A0A1S4A8H1_TOBAC; zinc-finger homeodomain protein 2-like
TrEMBL	A0A1U7VX16	0.0	A0A1U7VX16_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRING	XP_009769508.1	1e-173	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-63	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]