PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473036.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 463aa    MW: 53528.4 Da    PI: 8.5178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.3e-161695999
                    HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k+g l +pk f+ ++  +++++e+   t   ++g++W vkl  ++++    l++GW++F+++++L+ gD +vFk++g++ef   v +f++
  XP_016473036.1 16 PGFKQG-LKIPKGFL-KYlkDHDHNEH--AT-LRRDGKKWLVKL--NGRR----LEEGWEKFAEEHDLQLGDLLVFKHEGNMEF--EVIIFDS 95
                    455665.*******9.77564444444..44.347*********..8888....*************************99999..7777775 PP
2B351.12.4e-16138220490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      +++s++l++g l++p +fa+++g+  + + +l+++de+ rsW++kl    +  ++++++ W +F  an+Lk+gD ++F+++ + ++
  XP_016473036.1 138 CTVRSYYLTNGYLRVPSRFASKNGLTYK-KCDLIIRDERQRSWNLKL--YTSCHHVYIGGRWAKFHAANDLKVGDRIMFEVVTN-GE 220
                     5678*******************88754.459***************..999999*************************8764.33 PP
3B346.95e-15322406593
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     +++++ l+ + l+lp +fa ++g+++++  +l+++de+ rsW++ l  r  + ++ +++GW++F + + LkegD ++F+++  +++++v
  XP_016473036.1 322 TIRPYCLTYSYLILPTQFALTNGLINKK-CDLIIRDEWQRSWNLML--RPFGTSVCIRGGWRNFRDTHCLKEGDQIMFEVVT-DGTKPV 406
                     56788999999***********988654.59***************..*******************************876.455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-21498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915796IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-207102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-17894No hitNo description
SMARTSM010197.3E-201096IPR003340B3 DNA binding domain
PfamPF023622.1E-121894IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16133226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17134227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787135229IPR003340B3 DNA binding domain
SMARTSM010191.8E-8136230IPR003340B3 DNA binding domain
PfamPF023621.9E-14139221IPR003340B3 DNA binding domain
CDDcd100179.34E-13141214No hitNo description
Gene3DG3DSA:2.40.330.105.2E-16315409IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-17315409IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.237318412IPR003340B3 DNA binding domain
SMARTSM010192.6E-12319413IPR003340B3 DNA binding domain
PfamPF023625.6E-13322407IPR003340B3 DNA binding domain
CDDcd100175.65E-13333406No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MKIPPVKPHF FKPIQPGFKQ GLKIPKGFLK YLKDHDHNEH ATLRRDGKKW LVKLNGRRLE  60
EGWEKFAEEH DLQLGDLLVF KHEGNMEFEV IIFDSSHCDR EYAEYLQEEE DIVEGACKKF  120
ELKEGATHNP FGQSHFECTV RSYYLTNGYL RVPSRFASKN GLTYKKCDLI IRDERQRSWN  180
LKLYTSCHHV YIGGRWAKFH AANDLKVGDR IMFEVVTNGE RPIWKFHVKP NPSIKSSSKA  240
FPYAEAATHK PFGHSHLDSR HCNREYVEYL QEEEEAASDA VEGTSKEFEL KDEPNPSVKS  300
SSKAFPHVEA AIHKPFGHFV CTIRPYCLTY SYLILPTQFA LTNGLINKKC DLIIRDEWQR  360
SWNLMLRPFG TSVCIRGGWR NFRDTHCLKE GDQIMFEVVT DGTKPVWKFH GVAGKEVVSC  420
MMFWVLFLGH WNNKGVICSC ILISLKISRG LLTSKNCCTK GSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473036.10.0PREDICTED: B3 domain-containing protein REM5-like isoform X2
TrEMBLA0A1S4A8X90.0A0A1S4A8X9_TOBAC; B3 domain-containing protein REM5-like isoform X2
STRINGXP_009612446.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-40B3 family protein