PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473141.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 697aa    MW: 73938.7 Da    PI: 6.2722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000154474673555
                     TS-STCHHHHHHHHHHHHHHH CS
             HLH  35 skKlsKaeiLekAveYIksLq 55 
                     s++ +Ka++L +A+eY+k Lq
  XP_016473141.1 447 SERADKASMLDEAIEYLKTLQ 467
                     7899****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-6445487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-5446475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.30E-4447471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MPLSEFLKMA RGKLESGQQK ISSTTHLSSF PENELVELVW ENGQIMMQGQ SSSAKKNPIP  60
NKLPSNASKI GKFGVMDPML NDMPLSVPIG ELDLIQEDEG VPWLGYAADD SLQQDYCSQF  120
LPEISGLTTN EPAGQSEFGL INKRGSSDKM IRDSQSVPIH NAVNFDQRKV SPSSKFSLLC  180
SLAPQKGHAS IPSLGPGVSD IFSSKTSNNS VSVLGDSNQS QVSAGDVKSV KIQKQNMPGS  240
CSSLLNFSHF SRPATFVKAT KLQNITGVLA SDSSALEAKG CKEGENVTNS HNHVNAAAVE  300
DYLSFKKESG LQYPTSAVPS QRESRASGAS FHDRSSRVEQ SDNVFRESNS DNTPGQFTGA  360
KATTDTADGE GNAEHGVVCS SVCSGSSAER GSSDQPHNLK RKSRDNEDSG CPSEDVEEES  420
VGVKKSCPTR GGTGSKRSRA AEVHNLSERA DKASMLDEAI EYLKTLQLQV QIMSMGAGFC  480
VPPMMFPAGV QHMHAAQMPH FSPMGLGMGM GMGMGYGMGM LEMNGRSSGC PIFPIPSVQG  540
SHFPSPPIPA SAAYPGIAVS NRHAFAHPGQ GLPMPIPRPS LAPLAGQAST GAAVPLNVAR  600
VGVSVDRPSV PPILDSKNPV HKKNSQIVNN AECSLPINQT YSQVQATNEV LDKSALVQKN  660
DQLLDGTDSA ANILTNQTDV PGSEAGEFVR KDTATFS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473141.10.0PREDICTED: transcription factor PIF3-like isoform X3
TrEMBLA0A1S4A9840.0A0A1S4A984_TOBAC; transcription factor PIF3-like isoform X3
STRINGXP_009774962.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-28phytochrome interacting factor 3