PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473157.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 99aa    MW: 11236.4 Da    PI: 11.5352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.3e-1211791687
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87
                    +++p +fa+  g+++   k++tl + +g++W+v++  +  + r+++++GW  F  +n++   g+++ Fkl++ 
  XP_016473157.1 11 VTIPMTFARWTGIIN--MKKITLINGEGKKWKVNI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQG 79
                    69******9999884..558***************..999999****************989*******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.391195IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-121079IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-121078IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-101179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MAVRKTHSLF VTIPMTFARW TGIINMKKIT LINGEGKKWK VNIEHIGPRV LIKGGWAAFR  60
TQNKIAANGE TCRFKLIQGY GRGRGRPCYV LQVEKIPKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622139.21e-66PREDICTED: B3 domain-containing protein At5g18000-like
RefseqXP_016473157.12e-67PREDICTED: uncharacterized protein LOC107795091
TrEMBLA0A1S4A9354e-66A0A1S4A935_TOBAC; uncharacterized protein LOC107795091
STRINGXP_009622138.17e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-10B3 family protein