PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016473876.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 494aa MW: 54949.8 Da PI: 6.7268

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.2	3.3e-18	305	350	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dAA++Lgv ++LKriCR y I RWP+ k XP_016473876.1 305 YGITLEVLKQHFGKKLTDAANSLGVARSTLKRICRDYEIYRWPRVK 350 579****************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.344	288	378	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-16	307	352	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.61E-17	399	485	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-15	406	485	No hit	No description
PROSITE profile	PS51745	16.169	407	488	IPR000270	PB1 domain
SMART	SM00666	2.7E-14	407	488	IPR000270	PB1 domain
Pfam	PF00564	1.1E-14	408	486	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MDNPNNIELE GGKFLRKFIQ ESKDEPTKMA TKLYVILQHM RSSGKEDSMP FKVIARAMET 60 IVKQHGLDIE ALTSSRHPVT VGAQVGEVAL SQVAGSLQRV EVTRNMTVNF LGNEMVKADV 120 YASNGAVSGS SGSGHGIYRA SGIHISGHPR SATEATQDKG DAMQSGILFD MPNSFEIDQY 180 QPAAVATLDN GDTMQLDAFF DVRDFIEFGQ PLSATKDKGD ANLVDSNQTT TTCIADNRRH 240 SPTLDDDVAR SPPGLELGIG TQTVQLGSEH HQVDDVEVDA RDLQRNVVHA DLEKQNKTKR 300 IKREYGITLE VLKQHFGKKL TDAANSLGVA RSTLKRICRD YEIYRWPRVK SRKHNCSLSQ 360 AELLQVDRQP SDSGVRHQQY VDFSPRSGPK SATNSKELHV TMQSENFISV KVTYGNRTVR 420 FPLSFSSGKR DLEEEVEKRI KLVGNSSIRY EDEEKDLILI TCDSDLHYAM HTLRSLGRTI 480 IKMLVEIEPG TTIT

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MDNPNNIELE GGKFLRKFIQ ESKDEPTKMA TKLYVILQHM RSSGKEDSMP FKVIARAMET  60
IVKQHGLDIE ALTSSRHPVT VGAQVGEVAL SQVAGSLQRV EVTRNMTVNF LGNEMVKADV  120
YASNGAVSGS SGSGHGIYRA SGIHISGHPR SATEATQDKG DAMQSGILFD MPNSFEIDQY  180
QPAAVATLDN GDTMQLDAFF DVRDFIEFGQ PLSATKDKGD ANLVDSNQTT TTCIADNRRH  240
SPTLDDDVAR SPPGLELGIG TQTVQLGSEH HQVDDVEVDA RDLQRNVVHA DLEKQNKTKR  300
IKREYGITLE VLKQHFGKKL TDAANSLGVA RSTLKRICRD YEIYRWPRVK SRKHNCSLSQ  360
AELLQVDRQP SDSGVRHQQY VDFSPRSGPK SATNSKELHV TMQSENFISV KVTYGNRTVR  420
FPLSFSSGKR DLEEEVEKRI KLVGNSSIRY EDEEKDLILI TCDSDLHYAM HTLRSLGRTI  480
IKMLVEIEPG TTIT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016473876.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	A0A1S4AB98	0.0	A0A1S4AB98_TOBAC; protein NLP9-like
STRING	XP_009589178.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15579	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	5e-19	Nin-like family protein