PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474024.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 231aa MW: 26920.9 Da PI: 9.8486

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93.6	3.2e-29	31	151	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 GfrFhPtd elv +yL + v + +l++ i+e d+y+ ePw k + +e+ +yfF++ +kk+ +++r r++ +g Wk++ k k+v+s+kg XP_016474024.1 31 EGFRFHPTDTELV-KYLLQYVLKGRLPELIPIEEEDLYSKEPWVVFK--DRKERTLYFFTELKKKKIENSRFIRSVGKGSWKSQDKGKPVCSEKG 122 7**********.89999999999899889*********962..3467899*********************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g k++L + + +p + +W+m+ey+l XP_016474024.1 123 SVMGYKRSLRYQNSGSP--QDGQWLMKEYSL 151 *******955444..589*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-29	27	179	IPR003441	NAC domain
PROSITE profile	PS51005	31.588	29	179	IPR003441	NAC domain
Pfam	PF02365	1.3E-17	31	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSQLPSTSQT IMHNIKREEK ELCIENSVHT EGFRFHPTDT ELVKYLLQYV LKGRLPELIP 60 IEEEDLYSKE PWVVFKDRKE RTLYFFTELK KKKIENSRFI RSVGKGSWKS QDKGKPVCSE 120 KGSVMGYKRS LRYQNSGSPQ DGQWLMKEYS LTDEVKKILH QRSRGYDKDN YVLCRVKRKV 180 AKDDPIARKE SIEAAELEAI MNPTDGSTKF PNLSIDDVAK LKMRMQFASG K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-20	32	179	18	168	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589539.2	1e-172	PREDICTED: NAC domain-containing protein 78-like
Refseq	XP_016474024.1	1e-172	PREDICTED: NAC domain-containing protein 78-like
TrEMBL	A0A1S4ABN4	1e-171	A0A1S4ABN4_TOBAC; NAC domain-containing protein 78-like
STRING	XP_009589539.1	1e-163	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1024	13	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	1e-20	NAC domain containing protein 96