PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474349.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 1603aa    MW: 175263 Da    PI: 6.7643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.3e-0615801603226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      ++++C+ f+++G Ck G++C + H+
  XP_016474349.1 1580 GQRICK-FYESGRCKKGSSCDYLHP 1603
                      6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.97E-985157IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-8106164IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564110176IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7112158IPR001965Zinc finger, PHD-type
CDDcd155681.38E-19112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475925.45E-20409486IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.6E-25410493IPR003121SWIB/MDM2 domain
SMARTSM001513.6E-4412490IPR019835SWIB domain
PfamPF022017.5E-14412485IPR003121SWIB/MDM2 domain
SMARTSM007191.6E-38543653IPR004343Plus-3 domain
PROSITE profilePS5136024.497543676IPR004343Plus-3 domain
SuperFamilySSF1590421.18E-29544672IPR004343Plus-3 domain
PfamPF031269.9E-22548651IPR004343Plus-3 domain
SuperFamilySSF552771.57E-14831893IPR003169GYF domain
CDDcd000724.57E-15841897No hitNo description
PROSITE profilePS5082914.377841894IPR003169GYF domain
SMARTSM004441.4E-10842896IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-14843894IPR003169GYF domain
PfamPF022131.7E-9844885IPR003169GYF domain
SuperFamilySSF902295.18E-615781602IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61915781603IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-415821602IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1603 aa     Download sequence    Send to blast
MDGGNSSSEL YRPCVQQAHS LSFDGSTGTS MGLQGSEQCS SVQYMDDFQL VGVPAAVTGG  60
APITVAVDGR TSVANVIGDG VEKRKRGRPP RFHTTLAKPP PPKKPREEDE DVCFICFDGG  120
SLVLCDRKGC PKAYHPACIK RDEAFFRSKA KWNCGWHICS VCQKASHYLC YTCTYSLCKA  180
CTKNADYLCV RGNKGFCSTC MRTIMLIENK DQANKEMVQV DFDDKSSWEY LFKVYWVILK  240
EKLSLTLDEL LQAKNPWKES DAVHGKRQLM PYGHYVANDG KSVAVHGKRQ LMPYGHYVAN  300
DGKSVAVHGK RQLMPYGHYV ANDGKSVAGK SFDYIEQKKP IEPLELSKKD PPTAEIRAVS  360
DSGNASILSS TPLLELTKPV QELKVQNEDC LRSKQESTVA ETSVNGCMEW ASKELLDFVA  420
HMKDGDTSAI SQFDVQALLL DYIKRNNLRD PRRKSQIICD LRLKSLFGKP RVGHIEMLKL  480
LEFHFLIKEE SKKSAFIPAG IVGTMTSHVE PDDSNDISSS KKRRTRKNGE VKMTQINLDE  540
YAAIDAHNIN FIYLRRDLME TLAEDVEKFH DRVIGSVVRI RIPGNDQKQE IYRLVHVVGT  600
SKSSEPYKIR DKTVDVLLEV LNLDKKEALS IDSISNQDFC EDECRRLRQS IKCGLVKRLT  660
VGEIQKKAME LRAVKLNDSL EAEILRLNHL RDRASEKGHK KELRECIEKL ELLKTPEERQ  720
RRLLEIPEVH ADPKMDPDYE SEGDDGGSNY KRKVEYLAPR CTRISRRDEK LMSSGSLAKE  780
EGSIMARCRM SEKREACGYN ILDKLGNRLT AEQAVDRSGS ETSIASFSTV NLSSANSIET  840
DKLWHYRDPA GRIQGPFSVM QLRKWNTSGL FPPEMRIWTN HEHDDSILLT NALKGLFHKE  900
PQVHGQTSSQ SQEPAASDSR TSVRWSETAT GSGGECGKRE APGHPHKANY HSNGNTEFTM  960
MNGLSPSSPQ CLDSLKGNSS CSDKPQLSSP VPSSSQREVI LALPRQERGN ANDNCRPATD  1020
HGTQNSRGSA MCQINDGCGH NTQSNSRNLG SSLAQNPGSF TSNRYTINLD SGSRFASATK  1080
SSDSFEQKGN MSLPDLPSPT PETSYGELEA QAAEKLLLLS SVIPVCGSDN HDLPSPTPIS  1140
DRETQGGHAA ENRESVPSSL PVQESGHNWS SASSLVVGGV QLREIDGCGR SSPAAKPSIE  1200
EWDSGIVSAS SQKPAEAVGN NVATPMSNAN QLTAKPSTEE WDSGIVSSST LKPAEAVGNH  1260
VASPTSNADQ LTAKPSTTEE WDSGLVSVSS PKPAEAVGDH VATPTSNADQ LNHTSPSHPV  1320
SNFFGEPIEF STLAEESVSD LLAEVDAMES QNQNNMGSPT SAMRCGEEMI PGCRNDCFSP  1380
IEELGRTHDP VRSDALSSTG DLQLPCQSTV TDETVGASRA DAFDPLRRSG GNSSTSSEGE  1440
TKSADVLFSQ GDAGSNIPCT ISQTTAFSAM GRNTGLEGMT SGRGAAPGNT IWGGPVQGYA  1500
NVGFSSSMGA AWGNSHMNRG APFTGNPVWD SQRRYAGERS GGPREWALQG GESGFGRGRS  1560
SWNRQQPYGG GGYSRPPPKG QRICKFYESG RCKKGSSCDY LHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnd_C5e-14104179981Histone-lysine N-methyltransferase NSD3
4gne_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnf_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_D5e-14104179981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2414220.0AC241422.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-212h22 map 1, complete sequence.
GenBankAC2414250.0AC241425.15 Solanum lycopersicum strain Heinz 1706 clone slm-130o13 map 1, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474349.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1
TrEMBLA0A1S4ACL00.0A0A1S4ACL0_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGXP_009789365.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-131DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding