PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474354.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 1581aa    MW: 172853 Da    PI: 6.6505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0615581581226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      ++++C+ f+++G Ck G++C + H+
  XP_016474354.1 1558 GQRICK-FYESGRCKKGSSCDYLHP 1581
                      6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.75E-985157IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-8106164IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564110176IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7112158IPR001965Zinc finger, PHD-type
CDDcd155681.37E-19112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475925.23E-20387464IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.6E-25388471IPR003121SWIB/MDM2 domain
SMARTSM001513.6E-4390468IPR019835SWIB domain
PfamPF022017.4E-14390463IPR003121SWIB/MDM2 domain
PROSITE profilePS5136024.497521654IPR004343Plus-3 domain
SMARTSM007191.6E-38521631IPR004343Plus-3 domain
SuperFamilySSF1590421.15E-29522650IPR004343Plus-3 domain
PfamPF031269.7E-22526629IPR004343Plus-3 domain
SuperFamilySSF552771.57E-14809871IPR003169GYF domain
CDDcd000724.49E-15819875No hitNo description
PROSITE profilePS5082914.377819872IPR003169GYF domain
SMARTSM004441.4E-10820874IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-14821872IPR003169GYF domain
PfamPF022131.7E-9822863IPR003169GYF domain
SuperFamilySSF902295.18E-615561580IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61915561581IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-415601580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1581 aa     Download sequence    Send to blast
MDGGNSSSEL YRPCVQQAHS LSFDGSTGTS MGLQGSEQCS SVQYMDDFQL VGVPAAVTGG  60
APITVAVDGR TSVANVIGDG VEKRKRGRPP RFHTTLAKPP PPKKPREEDE DVCFICFDGG  120
SLVLCDRKGC PKAYHPACIK RDEAFFRSKA KWNCGWHICS VCQKASHYLC YTCTYSLCKA  180
CTKNADYLCV RGNKGFCSTC MRTIMLIENK DQANKEMVQV DFDDKSSWEY LFKVYWVILK  240
EKLSLTLDEL LQAKNPWKES DAVHGKRQLM PYGHYVANDG KSVAVHGKRQ LMPYGHYVAN  300
DGKSVAGKSF DYIEQKKPIE PLELSKKDPP TAEIRAVSDS GNASILSSTP LLELTKPVQE  360
LKVQNEDCLR SKQESTVAET SVNGCMEWAS KELLDFVAHM KDGDTSAISQ FDVQALLLDY  420
IKRNNLRDPR RKSQIICDLR LKSLFGKPRV GHIEMLKLLE FHFLIKEESK KSAFIPAGIV  480
GTMTSHVEPD DSNDISSSKK RRTRKNGEVK MTQINLDEYA AIDAHNINFI YLRRDLMETL  540
AEDVEKFHDR VIGSVVRIRI PGNDQKQEIY RLVHVVGTSK SSEPYKIRDK TVDVLLEVLN  600
LDKKEALSID SISNQDFCED ECRRLRQSIK CGLVKRLTVG EIQKKAMELR AVKLNDSLEA  660
EILRLNHLRD RASEKGHKKE LRECIEKLEL LKTPEERQRR LLEIPEVHAD PKMDPDYESE  720
GDDGGSNYKR KVEYLAPRCT RISRRDEKLM SSGSLAKEEG SIMARCRMSE KREACGYNIL  780
DKLGNRLTAE QAVDRSGSET SIASFSTVNL SSANSIETDK LWHYRDPAGR IQGPFSVMQL  840
RKWNTSGLFP PEMRIWTNHE HDDSILLTNA LKGLFHKEPQ VHGQTSSQSQ EPAASDSRTS  900
VRWSETATGS GGECGKREAP GHPHKANYHS NGNTEFTMMN GLSPSSPQCL DSLKGNSSCS  960
DKPQLSSPVP SSSQREVILA LPRQERGNAN DNCRPATDHG TQNSRGSAMC QINDGCGHNT  1020
QSNSRNLGSS LAQNPGSFTS NRYTINLDSG SRFASATKSS DSFEQKGNMS LPDLPSPTPE  1080
TSYGELEAQA AEKLLLLSSV IPVCGSDNHD LPSPTPISDR ETQGGHAAEN RESVPSSLPV  1140
QESGHNWSSA SSLVVGGVQL REIDGCGRSS PAAKPSIEEW DSGIVSASSQ KPAEAVGNNV  1200
ATPMSNANQL TAKPSTEEWD SGIVSSSTLK PAEAVGNHVA SPTSNADQLT AKPSTTEEWD  1260
SGLVSVSSPK PAEAVGDHVA TPTSNADQLN HTSPSHPVSN FFGEPIEFST LAEESVSDLL  1320
AEVDAMESQN QNNMGSPTSA MRCGEEMIPG CRNDCFSPIE ELGRTHDPVR SDALSSTGDL  1380
QLPCQSTVTD ETVGASRADA FDPLRRSGGN SSTSSEGETK SADVLFSQGD AGSNIPCTIS  1440
QTTAFSAMGR NTGLEGMTSG RGAAPGNTIW GGPVQGYANV GFSSSMGAAW GNSHMNRGAP  1500
FTGNPVWDSQ RRYAGERSGG PREWALQGGE SGFGRGRSSW NRQQPYGGGG YSRPPPKGQR  1560
ICKFYESGRC KKGSSCDYLH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnd_C5e-14104179981Histone-lysine N-methyltransferase NSD3
4gne_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnf_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_D5e-14104179981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2414220.0AC241422.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-212h22 map 1, complete sequence.
GenBankAC2414250.0AC241425.15 Solanum lycopersicum strain Heinz 1706 clone slm-130o13 map 1, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474354.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2
TrEMBLA0A1S4ACL50.0A0A1S4ACL5_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X2
STRINGXP_009789365.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding