PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474535.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 468aa MW: 48626.3 Da PI: 9.909

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.4e-08	75	119	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw XP_016474535.1 75 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 119 789************************984222488888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.937	70	127	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-12	71	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-13	71	122	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-8	74	125	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-6	75	119	IPR001005	SANT/Myb domain
CDD	cd11660	1.95E-14	76	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MLNGSTVEAP LTINIPNGQT SRTGMDNSFH GTSMHGTNIT VPVAVQKQPL ATVAAAEGLD 60 THGLACINLP PRRKRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR TASQLSQRWA 120 IIRKRQGTIV GNGSQLSEAQ LAARRAMSLA LNMPMGDNLK AACPISAGVG QNSGAGPSNS 180 SHSVAADFAS GGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSMVKVAAV AAGARVATTS 240 NGASLLKTVQ SKSAVQIPRG GPAVKSHVPV STNGLPSNVH FICTGLVSHS TGPSNASRPE 300 TLQVLGHSLK PVSSAVQPSP AGTSSRPNAS AAPDAPTCAP AAELEENTKQ KLLQKSQTTT 360 LSNAQSEKQV GVVGASGDKA LPPQVQQDKL PASSNPFIEK AEDQTSSFGD EVKEDRQDDQ 420 DSVPGIHVQE KLINDTTNPS KALARTENGS TNGSDLNKAP TRNQNGRE

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MLNGSTVEAP LTINIPNGQT SRTGMDNSFH GTSMHGTNIT VPVAVQKQPL ATVAAAEGLD  60
THGLACINLP PRRKRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR TASQLSQRWA  120
IIRKRQGTIV GNGSQLSEAQ LAARRAMSLA LNMPMGDNLK AACPISAGVG QNSGAGPSNS  180
SHSVAADFAS GGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSMVKVAAV AAGARVATTS  240
NGASLLKTVQ SKSAVQIPRG GPAVKSHVPV STNGLPSNVH FICTGLVSHS TGPSNASRPE  300
TLQVLGHSLK PVSSAVQPSP AGTSSRPNAS AAPDAPTCAP AAELEENTKQ KLLQKSQTTT  360
LSNAQSEKQV GVVGASGDKA LPPQVQQDKL PASSNPFIEK AEDQTSSFGD EVKEDRQDDQ  420
DSVPGIHVQE KLINDTTNPS KALARTENGS TNGSDLNKAP TRNQNGRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	PRRKRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014200	0.0	BT014200.1 Lycopersicon esculentum clone 133377F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474535.1	0.0	PREDICTED: uncharacterized protein LOC107796293
TrEMBL	A0A1S4ACY7	0.0	A0A1S4ACY7_TOBAC; uncharacterized protein LOC107796293
STRING	XP_009597578.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	4e-40	MYB_related family protein