PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474587.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 179aa MW: 20721.8 Da PI: 10.2709

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.7	8.4e-15	10	49	2	41
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ien+ nr vtf kRrng++KK +EL v+++aev i+ XP_016474587.1 10 KIENQNNRLVTFLKRRNGVFKKENELVVMTGAEVGTIVCP 49 79********************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.31E-19	1	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.75	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.5E-19	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-17	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MVRKSIRLAK IENQNNRLVT FLKRRNGVFK KENELVVMTG AEVGTIVCPQ GSKPYSFGHP 60 NVNETINKYV GEERPPSPSS PGIDDKYVQM FRKANSRELN TRFNSRQDQL VFVLNLKIKL 120 KQMNKKVEIH QEWFKGPIEK INYTEASILK EGLEDLLLKV KNYGTERGYG YENGKWKAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619329.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL62
Refseq	XP_016474587.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1S4AD52	1e-128	A0A1S4AD52_TOBAC; agamous-like MADS-box protein AGL62
STRING	XP_009619329.1	1e-129	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-20	AGAMOUS-like 61