PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475054.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 256aa    MW: 28979.6 Da    PI: 5.4422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-1573125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iN+ +++Lr+llP  +   ++kKls  ++  ++ +YI++Lq
  XP_016475054.1  73 KKLNHNASERDRRKKINTLYSTLRSLLPAsD---HAKKLSIPSTISRVLKYIQELQ 125
                     6789*************************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.87572124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1673141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-1373129No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1473143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1178130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLAISSSPLF SNNFGWLLED PISHELNMTS AETSSESVVA LQSLSQTRVL QHCDSNKFDQ  60
IINNGDQPDQ MVKKLNHNAS ERDRRKKINT LYSTLRSLLP ASDHAKKLSI PSTISRVLKY  120
IQELQNEVER LIQKKEELIS RTNSNKENSA DFNKQKRRGG VESSSLVISA SEVGDREVVI  180
QISTLKINKG SFAEAVSELE DEGLLLLNSS CFETLEDRVF YTLHFQQVQG TMVVELDTLR  240
DKLSSYFEKE DKLLPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475054.10.0PREDICTED: transcription factor ORG2-like isoform X1
TrEMBLA0A1S4AEK60.0A0A1S4AEK6_TOBAC; transcription factor ORG2-like isoform X1
STRINGXP_009625857.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-49bHLH family protein