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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016475702.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GeBP | ||||||||
| Protein Properties | Length: 238aa MW: 27425.5 Da PI: 10.2868 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 30.4 | 1e-09 | 93 | 137 | 48 | 97 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
+++++q+ +K+++LK+K++k + + ++++hdqki+e++++iWg
XP_016475702.1 93 NFTEKQIAKKLKKLKEKYHKLARS-----KSLIKTPHDQKIYEIARQIWG 137
6899***************99988.....6789****************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04504 | 8.8E-10 | 64 | 137 | IPR007592 | Protein of unknown function DUF573 |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 238 aa Download sequence Send to blast |
MCDFQTVHTY KSQLCPKFQL SPNTSSKTMT TPPRPKRNPT SAANHRKNSP KSPEKTISKT 60 PETHRVFTEN DEIQLLKTLS GSPNTSEFTS NGNFTEKQIA KKLKKLKEKY HKLARSKSLI 120 KTPHDQKIYE IARQIWGRNV AKGKEKEPVV ELHRSCEEEV NLEEFPFLVS EMMSVFGRSG 180 YCKEGLRRLG KEKLKKMNEK WMELRLKEAE IMVNKAKLYH EQLKSVVEGS KGTDNEAN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016475702.1 | 1e-177 | PREDICTED: uncharacterized protein LOC107797339 | ||||
| TrEMBL | A0A1S4AG93 | 1e-175 | A0A1S4AG93_TOBAC; uncharacterized protein LOC107797339 | ||||
| STRING | XP_009757927.1 | 1e-175 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA13634 | 7 | 8 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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