PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016475712.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 299aa MW: 34347.3 Da PI: 9.6634

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.5e-16	81	170	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++vF+l + + l+v XP_016475712.1 81 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCR--LKVY 167 89*******************8884..35678************555555....9********************865233..4777 PP EE- CS B3 96 vfr 98 ++r XP_016475712.1 168 IVR 170 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-19	73	172	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-22	74	172	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.59E-24	79	170	No hit	No description
Pfam	PF02362	1.2E-14	81	171	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-19	81	172	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.055	81	172	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MQFDEVNVGI KKTGPQVMKD MSLGLQGTHK QVFCKKSKKR RSCKKKMAMM QNLYGRFDLA 60 SSAKYRAEEV QSRLSTKYPS FMKPMIRSNV TAGFWLSLPR FFCQLHLPRH DTTVTLVDES 120 QEEYKTKYLA ERNGLSGGWR GFSLAHNLVE GDVLVFQLFR FCRLKVYIVR ANYLAEVDAA 180 LVLLHLDAHQ KQIDPVHQMQ DNRSTKQAGI KRQRFSSQQE EDDYSAEENM LHKHSHPRIT 240 FKDLDLPSKA AGLTYETLSI VDAVKASKIN DPSSWNTRPT ELEQLEIRSF SCGYSIEPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	45	RRSCKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	2e-62	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475712.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X3
TrEMBL	A0A1S4AGA2	0.0	A0A1S4AGA2_TOBAC; B3 domain-containing protein At5g42700-like isoform X3
STRING	XP_009778967.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-43	B3 family protein