PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016475713.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 295aa MW: 33977.9 Da PI: 9.6634

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.5e-16	77	166	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++vF+l + + l+v XP_016475713.1 77 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCR--LKVY 163 89*******************8884..35678************555555....9********************865233..4777 PP EE- CS B3 96 vfr 98 ++r XP_016475713.1 164 IVR 166 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.4E-19	69	168	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-22	70	168	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.38E-24	75	166	No hit	No description
PROSITE profile	PS50863	12.055	77	168	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-14	77	167	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-19	77	168	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MQFDEIKKTG PQVMKDMSLG LQGTHKQVFC KKSKKRRSCK KKMAMMQNLY GRFDLASSAK 60 YRAEEVQSRL STKYPSFMKP MIRSNVTAGF WLSLPRFFCQ LHLPRHDTTV TLVDESQEEY 120 KTKYLAERNG LSGGWRGFSL AHNLVEGDVL VFQLFRFCRL KVYIVRANYL AEVDAALVLL 180 HLDAHQKQID PVHQMQDNRS TKQAGIKRQR FSSQQEEDDY SAEENMLHKH SHPRITFKDL 240 DLPSKAAGLT YETLSIVDAV KASKINDPSS WNTRPTELEQ LEIRSFSCGY SIEPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	41	RRSCKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	2e-62	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475713.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X4
TrEMBL	A0A1S4AH03	0.0	A0A1S4AH03_TOBAC; B3 domain-containing protein At5g42700-like isoform X4
STRING	XP_009778967.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-43	B3 family protein