PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016476062.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 198aa MW: 21776.5 Da PI: 4.9612

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016476062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	7.8e-38	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+Ca++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e+ XP_016476062.1 8 SCGACKFLRRRCANECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFELEQQVASLVEEI 102 6*********************9978****************************************************************9 PP DUF260 95 allkee 100 + + ++ XP_016476062.1 103 EITAKQ 108 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.508	7	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-35	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAGPGGSSCG ACKFLRRRCA NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPLH 60 CRSEAAVTMS YEALARMQDP IYGCVGHIFE LEQQVASLVE EIEITAKQMA SYAGEVHMEN 120 TINTLQFSLE CNNMNVGNNH VNHSVTSLAH VNDTSANEAF ITQINAQLPE INGFDNLFST 180 TFFDFVFEGP DPICTSNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-33	4	116	6	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-33	4	116	6	119	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016476062.1	1e-147	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9LHS8	3e-52	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A1S4AH98	1e-145	A0A1S4AH98_TOBAC; LOB domain-containing protein 33-like
STRING	XP_009600628.1	1e-145	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-54	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]