PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476361.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 165aa    MW: 17784.8 Da    PI: 5.3356
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.82.1e-5527122297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdr+lPian++rimkk+lPan+ki+kd+k+tvqecvsefisf+tseasdkcq+ekrktingddll alatlGfedy++plkvyl++yre+eg+
  XP_016476361.1  27 REQDRYLPIANIGRIMKKALPANGKIAKDSKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLSALATLGFEDYIQPLKVYLARYREMEGD 121
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                      
  XP_016476361.1 122 A 122
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5123126IPR009072Histone-fold
SuperFamilySSF471132.48E-3829124IPR009072Histone-fold
PfamPF008082.9E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-197997No hitNo description
PRINTSPR006153.1E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAEPASPGGG GGSHESGGER SPQSNLREQD RYLPIANIGR IMKKALPANG KIAKDSKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLSALATLG FEDYIQPLKV YLARYREMEG  120
DAKGSARVGD ASVRKDIVGS QLGSNTQFVY EGSFAQGLDY GNSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4626117192Transcription factor HapC (Eurofung)
4g92_B2e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782060.11e-119PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_016476361.11e-119PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_019264327.11e-119PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK42e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S4AI781e-117A0A1S4AI78_TOBAC; nuclear transcription factor Y subunit B-10-like
TrEMBLA0A1U7X6G31e-117A0A1U7X6G3_NICSY; nuclear transcription factor Y subunit B-10-like
TrEMBLA0A314L5Z41e-117A0A314L5Z4_NICAT; Nuclear transcription factor y subunit b-10
STRINGXP_009782060.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-72nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]