PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476643.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 184aa    MW: 21327.6 Da    PI: 10.6768
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.64.4e-1355822956
                    HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56
                    +++eLA+kl+L+ rqV vWFqNrRa+ k
  XP_016476643.1 55 QKQELAAKLKLKPRQVEVWFQNRRARTK 82
                    89************************98 PP
2HD-ZIP_I/II87.91.3e-28541162789
     HD-ZIP_I/II  27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+
  XP_016476643.1  54 GQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNDENSRLKKELQELRS 116
                     69***********************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-42988IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-115382IPR009057Homeodomain-like
SuperFamilySSF466891.58E-105493IPR009057Homeodomain-like
PfamPF000461.8E-105582IPR001356Homeobox domain
CDDcd000862.29E-75585No hitNo description
PROSITE profilePS5007112.3255584IPR001356Homeobox domain
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
SMARTSM003403.3E-1784127IPR003106Leucine zipper, homeobox-associated
PfamPF021836.8E-1084116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MLGHVAVQKR DTRNPRRGHG QRPKATVSNN AHKGVINALR LITFNREYSM ALRGQKQELA  60
AKLKLKPRQV EVWFQNRRAR TKLKQTEVDC EFLKKWCQSL NDENSRLKKE LQELRSIKID  120
QWASPFHLQL PKIRTIALCP SCQKTENIKS EQKHCDLDCG NRKVANDAMS KEANSETILV  180
NEKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755192e-40HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476643.11e-135PREDICTED: homeobox-leucine zipper protein HOX1-like
TrEMBLA0A1S4AJP61e-133A0A1S4AJP6_TOBAC; homeobox-leucine zipper protein HOX1-like
STRINGXP_009630679.14e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-33HD-ZIP family protein