PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476861.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 540aa    MW: 58754.6 Da    PI: 7.012
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81.1e-16152238186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++ +f+q+e
  XP_016476861.1 152 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GITMSHWLWFKQME 238
                     5*************************************767778899************************99.555669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-19150240No hitNo description
Gene3DG3DSA:3.40.1160.109.9E-65289533IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.044294534IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.19E-52294533IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.78E-111297534No hitNo description
PfamPF006966.3E-22298513IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAVTV TPTTTTTHSS NPTYHHHHQP FSHRYKPAQI HAPPISSGSP  60
KNISGDEDGD GYSDNNNTPS YHIGVNPYDT DSNPFENDGD VNRSRLNQSN DNKRTDREDI  120
SDNGTPYNYK RSKITSSVAS GGSGEYRKDR EEWSDTAIAC LLEAYMEKFV QLNRGNLRGR  180
DWEEVAAMVS ERCEKQSKSV EQCKNKVDNL KKRYKLERHR MSNGGITMSH WLWFKQMEQI  240
VGNSVSGKAT STSEEDKAIV AVTNSGTSRQ SKRYGTAVPG PSGQIVKSKS SMGPRWRRVV  300
LKISGAALAG VTPNTNDPNN LDPKVAMLVA REVSIACRLG IEVAIVVGGR NFFCGDTWVT  360
STGLDRCTAY QIGMMATMMN SILLQSALEK LGVQTRVQSA FSMPELAEPY SRQRAMRHLE  420
KGRVVIFGGI GAGTGNPLFS TDTAAALRAS EIHADALLKG TNVEGVDVCD SRNNNVVAEH  480
ISFRELVSGG ASPLDLMAVT LCEENAIPVV IFSLHGPGNI SRALCGEQVG TLIDQTGRVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-542965339239Uridylate kinase
3ek5_B1e-542965339239Uridylate kinase
3ek5_C1e-542965339239Uridylate kinase
3ek5_D1e-542965339239Uridylate kinase
3ek5_E1e-542965339239Uridylate kinase
3ek5_F1e-542965339239Uridylate kinase
3ek6_A1e-542965339239Uridylate kinase
3ek6_B1e-542965339239Uridylate kinase
3ek6_C1e-542965339239Uridylate kinase
3ek6_D1e-542965339239Uridylate kinase
3ek6_E1e-542965339239Uridylate kinase
3ek6_F1e-542965339239Uridylate kinase
3nwy_A2e-5429653350279Uridylate kinase
3nwy_B2e-5429653350279Uridylate kinase
3nwy_C2e-5429653350279Uridylate kinase
3nwy_D2e-5429653350279Uridylate kinase
3nwy_E2e-5429653350279Uridylate kinase
3nwy_F2e-5429653350279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802965.10.0PREDICTED: uncharacterized protein LOC104248417
RefseqXP_016476861.10.0PREDICTED: uncharacterized protein LOC107798398
TrEMBLA0A1S4AJN50.0A0A1S4AJN5_TOBAC; uncharacterized protein LOC107798398
TrEMBLA0A1U7YW420.0A0A1U7YW42_NICSY; uncharacterized protein LOC104248417
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein