PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477044.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 367aa    MW: 39148.1 Da    PI: 8.164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-11300345655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  XP_016477044.1 300 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 345
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14297359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-11298349No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13299358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYPSSTSSSS QNSMSHSTTA GGGSNGGGGL TRYGSAPGAF LTTAVESVIA ANNHDFNLHG  60
SHHQHLGPSR YYSPNMASSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG NSGGGGCGVM  120
PAANSTTPLV RHSSSPARFL NQLAAAAGDT GFSVSMGRGS YNSKGITDSS RGITRLNSQL  180
SFTRQEALSQ IAEENEDVEG TSTDNGHRKS THSYATASSF AMGSWEDNNS IMFSVTPSKR  240
AKHISNDIVN GLDDGETQFQ FGLSQTALEM ASMDRLLHIP EDSVPCKIRA KRGCATHPRS  300
IAERERRTRI SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IRTLQDQVQN LNVELENCKC  360
GCKKSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1235191e-162EU123519.1 Nicotiana tabacum MYC mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477044.10.0PREDICTED: transcription factor bHLH128-like isoform X1
SwissprotQ8H1028e-78BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S4AKA50.0A0A1S4AKA5_TOBAC; transcription factor bHLH128-like isoform X1
STRINGXP_009803686.10.0(Nicotiana sylvestris)
STRINGXP_009620076.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]