PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477045.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 364aa    MW: 38856.8 Da    PI: 8.164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48e-11297342655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  XP_016477045.1 297 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 342
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14294356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-11295346No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13296355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYPSSTSSSS QNSMSHSTTA GGGSNGGGGL TRYGSAPGAF LTTAVESVIA ANNHDFNLHG  60
SHHQHLGPSR YYSPNMASSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG NSGGGGCGVM  120
PAANSTTPLV RHSSSPARFL NQLAAAAGDT VSMGRGSYNS KGITDSSRGI TRLNSQLSFT  180
RQEALSQIAE ENEDVEGTST DNGHRKSTHS YATASSFAMG SWEDNNSIMF SVTPSKRAKH  240
ISNDIVNGLD DGETQFQFGL SQTALEMASM DRLLHIPEDS VPCKIRAKRG CATHPRSIAE  300
RERRTRISGK LKKLQDLVPN MDKQTSYADM LDLAVQHIRT LQDQVQNLNV ELENCKCGCK  360
KSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1235191e-178EU123519.1 Nicotiana tabacum MYC mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477045.10.0PREDICTED: transcription factor bHLH128-like isoform X2
SwissprotQ8H1028e-77BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S4AK160.0A0A1S4AK16_TOBAC; transcription factor bHLH128-like isoform X2
STRINGXP_009620076.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]