PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016477046.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 190aa MW: 21385.6 Da PI: 8.3735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016477046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.6	1.4e-25	40	126	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ +s nge +++++vC+keg++++++++ + +r+ r gCka++ vkke+++kw+v+kl++eHnH+l+ XP_016477046.1 40 YYSTYATHLGFVMRVDAFLRSMCNGELVWHRLVCNKEGFSKSRQNQ--NGQRKCRAIREGCKAMIIVKKEQSEKWVVAKLVKEHNHPLV 126 8***************************************9988..778888889****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-24	40	126	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVESSSRKEL TRNGVEAEGH PNLEPYVGME FESEEAAKAY YSTYATHLGF VMRVDAFLRS 60 MCNGELVWHR LVCNKEGFSK SRQNQNGQRK CRAIREGCKA MIIVKKEQSE KWVVAKLVKE 120 HNHPLVGKPA NTHIDSILYQ TPSLRRSVLS SPVDSCGSFV VMICSLFGLK LADSIVLPQI 180 ILSNFEESFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-111	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-111	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016477046.1	1e-141	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4AK73	1e-139	A0A1S4AK73_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009762847.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-48	FAR1 family protein