PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477128.1
Common Namewizz
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 356aa    MW: 39125.7 Da    PI: 7.7633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-30169228159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a gCpvkkkv+rs ed++vv+ tYegeHnh+
  XP_016477128.1 169 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApGCPVKKKVQRSIEDQSVVVATYEGEHNHP 228
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-29160228IPR003657WRKY domain
PROSITE profilePS5081127.175164230IPR003657WRKY domain
SuperFamilySSF1182901.44E-25166229IPR003657WRKY domain
SMARTSM007743.0E-35169229IPR003657WRKY domain
PfamPF031061.1E-24170228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPLPV LDKVLKQEVQ SNFTGLSRDN MLVKDEAGDL LEELNRVSSE  60
NKKLTEMLTV VCENYNALRN QLMEYMNNQN NGVVDDSAGS RKRKAENISN PNNNNNNKNN  120
NLDIVCGRLS ESSSSDEESC CKKPREEHIK TKVSVVSMRT EASDTSLIVK DGYQWRKYGQ  180
KVTRDNPSPR AYFRCSFAPG CPVKKKVQRS IEDQSVVVAT YEGEHNHPVN PSKPEAAAGT  240
ATSTGSRLNV RTIGGTTASV PCSTTLNSSG PTITLDLTEP TTVAKGDIMK MSSSISPTGG  300
SSQRTTEGDH YSRPEFQQFL IEQMASSLTK DPSFKAALAA AISGKILQHN NQTSRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-211682311375WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280220.0AB028022.1 Nicotiana tabacum wizz mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312579.10.0probable WRKY transcription factor 40
TrEMBLQ9SSX80.0Q9SSX8_TOBAC; WIZZ
STRINGXP_009764801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-87WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Hara K,Yagi M,Kusano T,Sano H
    Rapid systemic accumulation of transcripts encoding a tobacco WRKY transcription factor upon wounding.
    Mol. Gen. Genet., 2000. 263(1): p. 30-7
    [PMID:10732671]