PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477162.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 311aa    MW: 35984 Da    PI: 4.524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.41.9e-25121432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     p+G rFhPtd e++ +yL   v++++l+ ++  ++ +d+y   ePw++ +   + +++++  yf ++++k+++t kr +r++ +g+Wk +gk +e
  XP_016477162.1  12 PMGHRFHPTDREVL-KYLIGFVRDEPLHSQNElMQVADLYADkEPWQIFEaydQGNNNNNTRYFITPQKKEKPTWKRVSRTVGKGTWKPQGKGRE 105
                     89**********99.9**********88766647777*997559****74232333344467********************************* PP

             NAM  92 vlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                     v++ kg+l+g  k+L +   +++++ ++ +W+m ey+l
  XP_016477162.1 106 VFDDKGRLMGYVKSLKYIpANKSSNNVNGEWLMTEYSL 143
                     ******************656888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-287166IPR003441NAC domain
PROSITE profilePS5100528.50911166IPR003441NAC domain
PfamPF023658.3E-1312143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEYSQAKCFS RPMGHRFHPT DREVLKYLIG FVRDEPLHSQ NELMQVADLY ADKEPWQIFE  60
AYDQGNNNNN TRYFITPQKK EKPTWKRVSR TVGKGTWKPQ GKGREVFDDK GRLMGYVKSL  120
KYIPANKSSN NVNGEWLMTE YSLFDRYLAA REIKNKGFVI CKIKKKGKPG DKKKGNNIDE  180
VVNDENMRDI EEFINTVLQE DVQVEDNGIR SNGTIAKLDD QENNIIQYVE GDQVRVHVLG  240
LLDSTEDIVD VNDHEEYVED CVDEGDEVQV HLLEEYIDSV LQSEDVQAED NQHATFWASA  300
EDVDLDTINF C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477162.10.0PREDICTED: NAC domain-containing protein 30-like
TrEMBLA0A1S4AKD40.0A0A1S4AKD4_TOBAC; NAC domain-containing protein 30-like
STRINGXP_009763090.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.17e-16NAC domain containing protein 76