PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477167.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 215aa    MW: 25131 Da    PI: 6.7723
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+  v+ lG ++W++ a+  g++R++k+c++rw +yl
   XP_016477167.1  8 KGPWFEEEDERLASIVAILGERRWDALAKASGLRRSGKSCRLRWMNYL 55
                     79********************************************97 PP
2Myb_DNA-binding51.62.1e-1665106548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++E+ l+v++ kq+G++ W++Ia+ ++ gRt++++k++w+++l
   XP_016477167.1  65 SEDEERLIVKLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106
                      89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.886355IPR017930Myb domain
SuperFamilySSF466893.33E-276102IPR009057Homeodomain-like
SMARTSM007171.2E-11757IPR001005SANT/Myb domain
PfamPF002493.2E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-20962IPR009057Homeodomain-like
CDDcd001679.79E-81055No hitNo description
PROSITE profilePS5129426.49256110IPR017930Myb domain
SMARTSM007171.7E-1560108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2463109IPR009057Homeodomain-like
PfamPF002492.6E-1464106IPR001005SANT/Myb domain
CDDcd001673.15E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQQEKLRKGP WFEEEDERLA SIVAILGERR WDALAKASGL RRSGKSCRLR WMNYLRPNLK  60
HGHISEDEER LIVKLQKQFG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKA LIYEQECSGS  120
NTSSNSELKS SFGKDDCSSA DSLTEMEVSN YSIDHSSKET ALPDWIPSWT YEQSQMEHHM  180
YLCRLNICSC YPQCFSEDNN NSFSTWDDTS SSIWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2861102105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-27611056159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-27611056159MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-2861102105C-Myb DNA-Binding Domain
1msf_C7e-2861102105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477167.11e-159PREDICTED: transcription factor MYB48-like
SwissprotQ9SCP11e-51MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A1S4AKD81e-158A0A1S4AKD8_TOBAC; transcription factor MYB48-like
STRINGXP_009625011.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-53myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]