PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477217.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 123aa    MW: 13992 Da    PI: 9.8494
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-171160149
                    S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgklyey 49
                    k+i  +s r vtfskRr+g++KKA EL S   +++va+++fs+tgk y+y
  XP_016477217.1 11 KKITKESSRMVTFSKRRKGLFKKAVELqSKTSGTQVAILVFSPTGKPYTY 60
                    678999*********************88899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.923364IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-21363IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-21483IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-9525IPR002100Transcription factor, MADS-box
PfamPF003191.6E-201260IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-92540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGTGKKKIEI KKITKESSRM VTFSKRRKGL FKKAVELQSK TSGTQVAILV FSPTGKPYTY  60
GGNDVLNTFE HHCDSSHSNG MTWDSNFNVE TCHDVNELLM FKAHLERTRD KLVESQFFES  120
TVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477217.19e-88PREDICTED: agamous-like MADS-box protein AGL28
TrEMBLA0A1S4AKI82e-86A0A1S4AKI8_TOBAC; agamous-like MADS-box protein AGL28
STRINGXP_009796162.16e-32(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-12AGAMOUS-like 29