PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477230.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 202aa    MW: 22187.9 Da    PI: 8.6043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.3e-1114431855
             AP2 18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +        ++kr++lg+f taeeAa+a+++a+  ++g
  XP_016477230.1 14 Y--------RKKRIWLGTFETAEEAARAYDEAAILMNG 43
                    3........36**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.274151IPR001471AP2/ERF domain
SMARTSM003802.5E-13757IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-121352IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-181451IPR001471AP2/ERF domain
PfamPF008471.6E-61543IPR001471AP2/ERF domain
CDDcd000183.90E-181653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MISFCSKRPS LSAYRKKRIW LGTFETAEEA ARAYDEAAIL MNGQVAKTNF PIVKENHGNN  60
SNDKKFPLSS ASTLSTVLNA KLRKCCKDPA PSMTCLRLDN DNCHIGVWQK RSGKNSGSNW  120
ITKIELGKKE EPHQSHDSMN SWSLSSSSGS TSSSSSSELG ISKPLDEENR AAMQMVEELL  180
NCNSPFSSAP ISDLSPSFSN FK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-95HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-95HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477230.11e-147PREDICTED: ethylene-responsive transcription factor WIN1-like
TrEMBLA0A1S4AKJ51e-146A0A1S4AKJ5_TOBAC; ethylene-responsive transcription factor WIN1-like
STRINGXP_009758054.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.23e-41ERF family protein