PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478000.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 568aa    MW: 63324.5 Da    PI: 7.1056
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-2428128198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF +    ++
  XP_016478000.1  28 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSFVFLR--GGNG 120
                     99****************************9555555679************************************************4..3788 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_016478000.1 121 ELRVGVRR 128
                     99****98 PP
2Auxin_resp97.51.9e-32154233183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+h ++t++ F v+Y+Pr+  s+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err++Gt+vg++dl++ +W++S WrsLk
  XP_016478000.1 154 ASHPVTTQTLFVVYYKPRT--SQFIIGLNKYLETVKHGYSVGMRFKMQFEGEESPERRFTGTIVGIEDLSS-QWKDSTWRSLK 233
                     678899************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-4019156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-4321143IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-2226128No hitNo description
PfamPF023621.9E-2228128IPR003340B3 DNA binding domain
SMARTSM010191.6E-2228130IPR003340B3 DNA binding domain
PROSITE profilePS5086312.46428130IPR003340B3 DNA binding domain
PfamPF065072.0E-30154233IPR010525Auxin response factor
PfamPF023098.6E-12454547IPR033389AUX/IAA domain
SuperFamilySSF542771.77E-11457539No hitNo description
PROSITE profilePS5174521.472463544IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPEAAEQAEP TSQDPCPPEP QRPKVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMN  60
QQTPTQELIA KDLHGTEWHF KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD SFVFLRGGNG  120
ELRVGVRRLA RQQSSMPSSV ISSQSMHLGV LATASHPVTT QTLFVVYYKP RTSQFIIGLN  180
KYLETVKHGY SVGMRFKMQF EGEESPERRF TGTIVGIEDL SSQWKDSTWR SLKVQWDEPA  240
SISRPDRVSP WEIEPFVVSV PNPLVPPMAG KNKRHRPHSE AKISEPASSI ASAVWNPSTD  300
SPQFNTTGIN SSTNCMLTSH TDSVCGWRLP HLHTSSSMLV DETEDTKSAS AWSGFPSVLS  360
SQFSNGTNQP ILSPTDERKC DTITTCRLFG IDLKSTLIST TEAPLPKPAN ISNVFAERAS  420
PNTVPAFDSD QNSDLSIDFK DQKQGQLQLL LKEVQSKQNC STRSRTKVQM QGVAVGRAVD  480
LTALKGYNEL IKELEEMFEI QGELHPRNKW EMVFTDDEGD MMLMGDHPWL EFCNVVRRIF  540
IVSSQDMKKW SAGNKVLSCA ADNEAIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-129125698355Auxin response factor 1
4ldw_A1e-129125698355Auxin response factor 1
4ldw_B1e-129125698355Auxin response factor 1
4ldx_A1e-129125698355Auxin response factor 1
4ldx_B1e-129125698355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478000.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S4AN080.0A0A1S4AN08_TOBAC; Auxin response factor
STRINGXP_009592767.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23472450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9