PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478079.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 245aa    MW: 27834.4 Da    PI: 7.0094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-1269115354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riNs +++Lr+ll  +      K +Ka+ L k+v+ +++L
  XP_016478079.1  69 KNHKEAERRRRERINSHLDRLRTLLSCN-----SKTDKASLLAKVVQRVREL 115
                     78***********************997.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.36466115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1269124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-969115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.21E-469118No hitNo description
SuperFamilySSF474594.19E-1370125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQQENMLENL DFCHHLTQNK SNENMGEYGF DIPAIKSFCS SSFYSQSVKF QETVESITTP  60
EARAIAASKN HKEAERRRRE RINSHLDRLR TLLSCNSKTD KASLLAKVVQ RVRELKQQTS  120
EIMQLDETNF PSETDEITVL SSNDCLSDGR LLIKASLCCD DRFDLIPDLI ETLKSLGLSP  180
LRAEMVTLGG RIRNVIVLAV DKDHSSDESL LFLRDALRSI VQRSSYGTGE RSKRRRVLDQ  240
GTSNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
2232236KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754499e-83HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602423.10.0PREDICTED: transcription factor bHLH106-like
RefseqXP_016478079.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806748e-64BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1S4AN701e-179A0A1S4AN70_TOBAC; transcription factor bHLH106-like
STRINGXP_009602423.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]