PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478131.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 350aa    MW: 40076.7 Da    PI: 4.9645
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.21.9e-31711632103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+ye+l d +++ lisw+ ng+sf+++d ++fa kvLp++F+h+n++SFv QLn YgF+k++ ++          eF+h+ F++gk + l++
  XP_016478131.1  71 FVLKIYEMLADIQFNPLISWNGNGTSFIIHDCHKFAAKVLPRFFRHNNISSFVCQLNCYGFRKISWDK---------FEFQHECFQRGKGQWLKN 156
                     9*****************************************************************99.........67**************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikrk s+
  XP_016478131.1 157 IKRKGSK 163
                     ***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-3867160IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.1E-3168160IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.03E-2968160IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2771160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-137194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-13109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-13122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTNNIGELLE EWYEDEGLED VQIDISMLEN DDYQGDNTNN EGIHGSATGA HQHGFGVRNS  60
RRNLQKRACP FVLKIYEMLA DIQFNPLISW NGNGTSFIIH DCHKFAAKVL PRFFRHNNIS  120
SFVCQLNCYG FRKISWDKFE FQHECFQRGK GQWLKNIKRK GSKKSEMNQQ PQEQGIDETQ  180
LDILEKEMED NTKQARNHVS SKKAKILKYL LGPLFECIGE VGSSEVAQGL QEEEKQGDDI  240
EDGVENRGQK RKKQVEEELQ GKNEGSKKIA AAGVSDFRSD SDLRKMLMDE MDMNNLAQEQ  300
PDNFLESEEQ AEGPSFWIDY VEKLDHKPIL SGVGPAVSQS QENHISKLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-227116520125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478131.10.0PREDICTED: heat stress transcription factor A-6a-like, partial
TrEMBLA0A1S4AN930.0A0A1S4AN93_TOBAC; heat stress transcription factor A-6a-like
STRINGXP_009790212.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-28HSF family protein