PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478543.1

Common Name

NtBBF2

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 249aa MW: 27734.9 Da PI: 6.4906

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	47	108	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+C+ryWt+GG+lr +P+Ggg+rk+kksss XP_016478543.1 47 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRSIPIGGGSRKSKKSSS 108 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	34	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	48	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.407	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDTAQWPQEI VVKPMEEIIP KNTNTITTIC SSKPSTHIER KIRPHQKDQA LNCPRCNSTN 60 TKFCYYNNYS LSQPRYFCKT CKRYWTEGGS LRSIPIGGGS RKSKKSSSTN CSSSNTVLRE 120 FSKNVVAPVL DPPKMEGSQD LNLGFSCDFK TISELIQVPN NSFMPMPISD PNSVYSSLNF 180 SLDYGLGISG DYENNLQDVQ DSTTSGRLLF PFEDLKQISN TSIDCAEENR DGESNGYWNA 240 VLGGNGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB971709	0.0	AB971709.1 Nicotiana tabacum NtBBF2 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312609.1	0.0	dof zinc finger protein DOF1.8-like
Refseq	XP_009788365.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
Swissprot	Q8LAP8	2e-49	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A0B6VI93	0.0	A0A0B6VI93_TOBAC; Dof zinc finger protein
TrEMBL	A0A1U7XPF8	0.0	A0A1U7XPF8_NICSY; dof zinc finger protein DOF1.8-like
STRING	XP_009788365.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	6e-42	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]