PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478899.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 142aa    MW: 15782.6 Da    PI: 5.5947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.53.2e-19113141230
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa 30 
                     +DgynWrKYGqK+vkgse+prsYY+Ct++
  XP_016478899.1 113 EDGYNWRKYGQKQVKGSENPRSYYKCTHP 141
                     8**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-16109141IPR003657WRKY domain
SuperFamilySSF1182909.55E-15111141IPR003657WRKY domain
SMARTSM007746.8E-8112142IPR003657WRKY domain
PROSITE profilePS5081115.686113142IPR003657WRKY domain
PfamPF031069.9E-14113140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVNGSNWNLE EALKLLSAGV TAPARLGPQV ILSNISQQCF PNIKVLVHSQ NYLLSHYCFA  60
EKDVRDSNVT PDSINFQTVG SIVEHSPPLD EPQDEEIDQR VGGDPNVVGA PAEDGYNWRK  120
YGQKQVKGSE NPRSYYKCTH PK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0635761e-105AB063576.1 Nicotiana tabacum NtWRKY-9 mRNA for WRKY DNA-binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478899.11e-103PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A1S4AQD91e-102A0A1S4AQD9_TOBAC; probable WRKY transcription factor 2
STRINGXP_009758579.15e-72(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2322222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.14e-18WRKY DNA-binding protein 34