PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479025.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 253aa    MW: 29465.2 Da    PI: 7.1511
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34291202102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF++++F+kg+++ll++
  XP_016479025.1  29 FLLKTYMLVEDPATDDVVSWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR---------WEFSNDKFRKGERDLLCD 114
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_016479025.1 115 IRRRKA 120
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3622113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-3324118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5225118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMEVLFEEVQ SDEKSLLLEY VRKSSPSPFL LKTYMLVEDP ATDDVVSWNS DGTAFVVWQP  60
AEFARDLLPT LFKHSNFSSF VRQLNTYGFR KIATSRWEFS NDKFRKGERD LLCDIRRRKA  120
WTNKQQPNNN NNNNNGQSEC TNSNKKETEE NQRSSSSTSS SSEFTILVDE NKRLKMENGV  180
LSSELSVMKN KCKELIDIVT IFAKNPEKEE KKQQDERPML FGVRLEVQEE MERKRKRAEL  240
TETASVFLSQ LCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B4e-21271182104Putative transcription factor
5d5x_B4e-21271182104Putative transcription factor
5d5x_E4e-21271182104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5386071e-118AJ538607.1 Nicotiana tabacum cDNA-AFLP-fragment BC3-M41-017.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479025.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222301e-66HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S4AR320.0A0A1S4AR32_TOBAC; heat stress transcription factor B-3-like
STRINGXP_009617028.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-64heat shock transcription factor B3