PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016479232.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 366aa MW: 42297.6 Da PI: 6.5152

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016479232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.5	1.6e-22	114	201	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +Wt+++v++Li+a+++++e++ ++ kk++W+++s +m+erg ++sp+qC++k++++nk++k+++++ +++t + + ++ ++++ + XP_016479232.1 114 KWTDDMVKLLITAVSYIGEDVLSNGvfIKKGKWRAISCVMAERGHHISPQQCEDKFNDMNKKFKRLNDILGRGTaCHVMENPALLEMM 201 7*****************998654589******************************************637777777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.0E-20	112	227	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVYQIAAGIN TFLDRASTAC AFHRSRLVSG ELELFSSMQV NHPNQGPVVL GQHAPEVTSF 60 GVSNMEDIDQ EMQLLDSIKL NSVEMPEAYH EGMNDVTEVS GHAEEKQPVY HRMKWTDDMV 120 KLLITAVSYI GEDVLSNGVF IKKGKWRAIS CVMAERGHHI SPQQCEDKFN DMNKKFKRLN 180 DILGRGTACH VMENPALLEM MDLSDNLKEE MKKLLGSKQL FYQEMCSYNN QNRLFLPHDQ 240 EVQQSVLLAV KGKDKCDTKN VLQDLPLKRK TSGEERVSKD KRVSMNNEER EIQDEHSLPR 300 LRQLEEQKLQ IQAQILELEK KRFKHMRFCS KEDKELQKMM LDNEVIKLEN QRLVLELKLS 360 GMRPFD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVYQIAAGIN TFLDRASTAC AFHRSRLVSG ELELFSSMQV NHPNQGPVVL GQHAPEVTSF  60
GVSNMEDIDQ EMQLLDSIKL NSVEMPEAYH EGMNDVTEVS GHAEEKQPVY HRMKWTDDMV  120
KLLITAVSYI GEDVLSNGVF IKKGKWRAIS CVMAERGHHI SPQQCEDKFN DMNKKFKRLN  180
DILGRGTACH VMENPALLEM MDLSDNLKEE MKKLLGSKQL FYQEMCSYNN QNRLFLPHDQ  240
EVQQSVLLAV KGKDKCDTKN VLQDLPLKRK TSGEERVSKD KRVSMNNEER EIQDEHSLPR  300
LRQLEEQKLQ IQAQILELEK KRFKHMRFCS KEDKELQKMM LDNEVIKLEN QRLVLELKLS  360
GMRPFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016479232.1	0.0	PREDICTED: uncharacterized protein LOC107800554
TrEMBL	A0A1S4AR54	0.0	A0A1S4AR54_TOBAC; uncharacterized protein LOC107800554
STRING	XP_009759481.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	4e-71