PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479249.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 231aa    MW: 26087.1 Da    PI: 7.293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-163988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d s    +  r +lg+f+ aeeAa a+++a++ l+g
  XP_016479249.1 39 KFIGVRQRP-SGRWVAEIKDSS----QeLRLWLGTFDRAEEAALAYDNAARLLRG 88
                    899******.7*********42....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-293898No hitNo description
SuperFamilySSF541716.21E-193997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-273996IPR001471AP2/ERF domain
PfamPF008472.3E-103988IPR001471AP2/ERF domain
PROSITE profilePS5103219.2563996IPR001471AP2/ERF domain
SMARTSM003805.4E-3039102IPR001471AP2/ERF domain
PRINTSPR003671.0E-64051IPR001471AP2/ERF domain
PRINTSPR003671.0E-66278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MESSKSQSSE SLNNSSKNIQ EKQVIKRKSK LISSNDGKKF IGVRQRPSGR WVAEIKDSSQ  60
ELRLWLGTFD RAEEAALAYD NAARLLRGRN AKTNFKYQGI LKPNEENCSL LEKNPRLYQL  120
LKLAIMKKLA GNRYQNEIET EAFVQENMGC DQDKEEICRI QLQGSSSKVY SSVIVAPSFS  180
ASVADQSGKK DQEEEEEVEE NHYQTSAQLF ECLFSHANKS SAENNGLNSS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-143795362ATERF1
3gcc_A4e-143795362ATERF1
5wx9_A5e-14391091478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479249.11e-169PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A1S4ARD91e-167A0A1S4ARD9_TOBAC; ethylene-responsive transcription factor SHINE 2-like
STRINGXP_009762079.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-17related to AP2 11