PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479822.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 194aa    MW: 21990.8 Da    PI: 5.1384
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-191362356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a+  l+ge
  XP_016479822.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGE 62
                    9****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-321270IPR001471AP2/ERF domain
PROSITE profilePS5103223.091269IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-221270IPR016177DNA-binding domain
SMARTSM003808.0E-361275IPR001471AP2/ERF domain
CDDcd000181.66E-221371No hitNo description
PfamPF008472.3E-121362IPR001471AP2/ERF domain
PRINTSPR003671.1E-121324IPR001471AP2/ERF domain
PRINTSPR003671.1E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEDHQQSSSI HTYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK  60
GERARLNFPE LIDSFPKPSS SKSEDVQMAA HEAAMRFKRQ TPEPPESGGC GGGGTMVPVR  120
VGLSSSQIQA INESPLDSPK MWMELAGALL LRDPVREYTC PSYSFTDPMV LGEDIVEFEE  180
WDEMQQHHES IWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-191374668ATERF1
3gcc_A8e-191374668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-72HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783971.11e-144PREDICTED: ethylene-responsive transcription factor ERF022-like
RefseqXP_016479822.11e-144PREDICTED: ethylene-responsive transcription factor ERF022-like
TrEMBLA0A1S4ASV61e-142A0A1S4ASV6_TOBAC; ethylene-responsive transcription factor ERF022-like
TrEMBLA0A1U7X2T01e-142A0A1U7X2T0_NICSY; ethylene-responsive transcription factor ERF022-like
STRINGXP_009783971.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-52ERF family protein