PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480020.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 187aa    MW: 21387.8 Da    PI: 10.0418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247e-081664655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                    + +E++RR+++++ +++L +ll + a   +sk  l   +    A++YIksL+
  XP_016480020.1 16 KYVEKNRRNNMKNLYNQLHSLLLNhA---SSKEtLALPDRIDAATNYIKSLE 64
                    568*********************66...66667****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0041063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-71181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-91289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-41764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-41868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MESGLRSNSA PKLERKYVEK NRRNNMKNLY NQLHSLLLNH ASSKETLALP DRIDAATNYI  60
KSLETKLEKN KMYLEELRIS CRKRPRSVKA TNELPSSSTK SLPQIEFHEM SPTMFVVLIT  120
GLDNLAIFYN IIRLLNEEGV EVLYSSFSLN GNSTLQISLE TKVSIPMKQG FISLMVIQLS  180
FNFTKVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480020.11e-133PREDICTED: uncharacterized protein LOC107801248
TrEMBLA0A1S4ATX51e-132A0A1S4ATX5_TOBAC; uncharacterized protein LOC107801248
STRINGXP_009591015.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-23bHLH family protein