PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480385.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 548aa    MW: 60415.8 Da    PI: 5.3629
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.87.4e-2433121396
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     f+++ws+eDe++lL G+i+f++++g + + ++ afy++v +s+ ++++ +ql eK+r L+kK +k+v++     ++  +++h+ + f+ls+kiW
  XP_016480385.1  33 FSKVWSDEDEVSLLTGIIKFRKEKGLDIQTNMFAFYNYVIDSLMLRATLTQLREKVRALRKKHEKNVSR-----KKGPKTPHEVELFQLSQKIW 121
                     899******************************************************************.....556679************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.5E-2233121IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MADDAGSGSG SSSTDQAQNQ RTAQKNKSKH TPFSKVWSDE DEVSLLTGII KFRKEKGLDI  60
QTNMFAFYNY VIDSLMLRAT LTQLREKVRA LRKKHEKNVS RKKGPKTPHE VELFQLSQKI  120
WMVNVKESEH QKEFVGGKSE IPNTSEPRQP VKQNLLENWM SQQHIPEIEQ PKQEIIPKIG  180
LGSQNLLTLL KRIAEDVELV ANAMSRSQRQ VDGERSDLYF QSTDLLVKFG RLVKEIKAKP  240
EMRHSSELLE QEILKAYLEA KIEHTQLVSN AYNTFIQVDV VVAAPTKPMK KGKREAENEI  300
EKLGSTKKQK KHLAVAQAAE KKKSDAKAQK KKKKKKQETS SCDDSSQPED EKKLTEAAAP  360
PKKVTPAKNE KLASSSDDSD SSGEDEAPSK KAVATSSKNG LAAKNNDDPS DDSNSEAKKP  420
PANGSAAASK KDESSDESSS EDDSSSSEAD EAPAAASKKE ESSDDDDDDD EPPSKVVSQS  480
TKAAQAVKKN SDSSEETDYD EDDSDSDKGK AAAVCKKKVP SSADGDDESK DDTSEESDEE  540
EPQKKKIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320335KKKSDAKAQKKKKKKK
2329335KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480385.10.0PREDICTED: lisH domain-containing protein C1711.05-like, partial
TrEMBLA0A1S4AUY60.0A0A1S4AUY6_TOBAC; lisH domain-containing protein C1711.05-like
STRINGXP_009785066.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138051214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.14e-13DNA-binding storekeeper protein-related transcriptional regulator