PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480478.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 352aa    MW: 39154.2 Da    PI: 8.1991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.99.8e-24126185258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqK++ g+++pr YYrC+ +   +C ++k v+rs+++p ++e++Y ++H +
  XP_016480478.1 126 EDGYSWRKYGQKHILGAKYPREYYRCARRhlsKCIATKMVKRSDTEPPIFEVIYGESHSC 185
                     7**************************98889**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23112187IPR003657WRKY domain
SuperFamilySSF1182901.44E-21121187IPR003657WRKY domain
SMARTSM007741.2E-27125187IPR003657WRKY domain
PROSITE profilePS5081118.154126184IPR003657WRKY domain
PfamPF031062.6E-22126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKQDVCQY LSVEILSSYD KALSLLNGTA  60
LSVMSKGKQI INSAPSSSTA KLESPHLPVD SSTKSSDRPS NSRKRKMISR RTEYVHARSR  120
EEVPPEDGYS WRKYGQKHIL GAKYPREYYR CARRHLSKCI ATKMVKRSDT EPPIFEVIYG  180
ESHSCGQESK NQNEDLPAPV LTVLTKEKQS EEVGRRGEIS ESDIAEMVST PNNSFNNSST  240
DSPLYLMMDL KMLAALIKVS ISSPHQLQSA ICYLMIVSLP YLIVHLKMRG ASIEVSASVL  300
GGNGQLTSAI PSVVLASGLA LLTILMMLLW LTMMPPIDCT GKMPESTSLS VT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480478.10.0PREDICTED: probable WRKY transcription factor 41 isoform X3
TrEMBLA0A1S4AVF50.0A0A1S4AVF5_TOBAC; probable WRKY transcription factor 41 isoform X3
STRINGXP_009793242.11e-174(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-32WRKY family protein