PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016480560.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 212aa MW: 23208.3 Da PI: 6.4769

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016480560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.6	1.9e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_016480560.1 45 PCAACKILRRRCAEKCVLAPYFPPNNPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQAQLA 139 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_016480560.1 140 KAQAE 144 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.058	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-43	45	142	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEYSSDTKAT VISTSPSSSR SVSPPSSSSS SPNSPPPPPM VVVSPCAACK ILRRRCAEKC 60 VLAPYFPPNN PIKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC 120 AGAICQLQKQ VNELQAQLAK AQAEVVNMQC QQANLMALIC MDMDQSSPQA SPQQQSNLES 180 FTNNIPHSFQ NNMSFLDDNN NFGSVWEPLM WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	44	152	10	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	44	152	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	3e-54	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	3e-54	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763968.1	1e-155	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016480560.1	1e-155	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-74	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4AVF6	1e-154	A0A1S4AVF6_TOBAC; LOB domain-containing protein 1-like
TrEMBL	A0A1U7VC88	1e-154	A0A1U7VC88_NICSY; LOB domain-containing protein 1-like
STRING	XP_009763968.1	1e-154	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-62	LOB domain-containing protein 1