PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480568.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 259aa    MW: 29593.1 Da    PI: 9.9965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-1283128454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N+ f++Lr+llP+      +K +Ka++L  ++e I sL
  XP_016480568.1  83 HHMISERRRREKLNENFQQLRSLLPPG-----TKKDKASVLAATTENIISL 128
                     68899********************97.....79**********9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-978133No hitNo description
PROSITE profilePS5088814.48179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1680146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1583146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-983128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1185134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEDENDAITR AYHSSHSQIQ ENLARDYRLA TQKATAFRRF IRSNLVPILA HKQNMLNRSI  60
TFFKNLYLMR RQEQIQVKST QVHHMISERR RREKLNENFQ QLRSLLPPGT KKDKASVLAA  120
TTENIISLKA QVEELSKRNE ILEAQLLKKK EASEFTSGSG KLVVQIINIS ESTSEARIVE  180
LQVIVKGKCS KLDLVIRLLE FLKMADNVSI ESVEANTRMV QSCPVTLVTL RLRIQGDEWD  240
ESAFLEAAKK VAGDMEIIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792ERRRRE
28893RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480568.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1S4AVP40.0A0A1S4AVP4_TOBAC; putative transcription factor bHLH041
STRINGXP_009621466.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-50bHLH family protein