PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481027.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 422aa    MW: 47691.8 Da    PI: 7.989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_016481027.1 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding445.1e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++++E+ l++++++ lG++ W+ Ia +++ gRt++++k+ w+
   XP_016481027.1  67 RGTFSQDEENLIIELHAVLGNK-WSQIATRLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.558965IPR017930Myb domain
SuperFamilySSF466894.12E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001678.04E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2465116IPR009057Homeodomain-like
SMARTSM007172.6E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.72366116IPR017930Myb domain
PfamPF002495.7E-1367109IPR001005SANT/Myb domain
CDDcd001671.20E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVENEEKASA NSNNKNTDKV SESSNNDQLN FVEAAHENGF SIEKPKSSSM  180
TIMDHYPLIE TNNIAPPTHE FFTTNCKSPY FSNYLSFQHL NNYTPNTNIL FNNKNSAHDM  240
VSDHQFNCSL SPMSNSILTT SPLARIKSPS LTTLPPDNSF NINKSQNWEA CTLSSNSNGS  300
SNSIELQSNC SFFDNNAAAF AWGSTTAHGS GKPEREEIKW SEYLQTPFSL GSNTIQNHQI  360
SSQHQDLYNN ETKSETQFMT QGSLGTTTTW LQNQPQESSL QNANLYNSNT YQRLPAAFGQ  420
FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755134e-52HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769917.10.0PREDICTED: transcription factor MYB86-like
RefseqXP_016481027.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S4AWM60.0A0A1S4AWM6_TOBAC; transcription factor MYB86-like
TrEMBLA0A1U7VPT30.0A0A1U7VPT3_NICSY; transcription factor MYB86-like
STRINGXP_009769917.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-98myb domain protein 61