PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481312.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 433aa    MW: 47249.6 Da    PI: 8.5931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.5e-114873227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_016481312.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                    6899********************97 PP
2zf-CCCH40.15.9e-1393118227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_016481312.1  93 GQPECQYYLKTGTCKFGATCKFHHPK 118
                     5799********************96 PP
3zf-CCCH39.49.9e-13140164327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_016481312.1 140 EAECAYYMRTGQCKFGSTCKFHHPQ 164
                     689********************97 PP
4zf-CCCH36.67.6e-12295319327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_016481312.1 295 QPECQFYMKTGDCKFGAVCRFHHPR 319
                     799********************96 PP
5zf-CCCH40.25.8e-13339365127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_016481312.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.62991119IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-591118IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-694120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-597117IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6139165IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4143163IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244292320IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8295319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.41E-5295322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5298322IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037338366IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP  180
VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSG QMGSISSPEG  240
QQQTAGNSQV YGTSRSGDAA NMGSQGVTSP YRPASVPMGY YALQGENVFP ERHGQPECQF  300
YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK  360
FDHPMTVFTY SISASSSTDA PAVQRLLGSS SGTSALTLTS EGLVEAVSTK PRRLSLSETR  420
KMPPGDNNID REG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611380.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
RefseqXP_016481312.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4AXF50.0A0A1S4AXF5_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X4
STRINGXP_009793876.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1