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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016481338.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 659aa MW: 73206 Da PI: 6.5498 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.8 | 5.9e-29 | 194 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
XP_016481338.1 194 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 247
79*******************.********************************8 PP
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| 2 | Response_reg | 82 | 1.9e-27 | 14 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l++ +y +v+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + G
XP_016481338.1 14 VLVVDDDPTCLRILEKMLRNCHY-QVTKCNRAEVALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKGVTHG 106
89*********************.***************999999**********************6654.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l +
XP_016481338.1 107 AYDYLIKPVRIEALKN 122
************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 5.4E-182 | 1 | 650 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 1.1E-42 | 11 | 135 | No hit | No description |
| SuperFamily | SSF52172 | 2.56E-36 | 11 | 135 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 1.4E-31 | 12 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.948 | 13 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 1.4E-24 | 14 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.14E-28 | 15 | 127 | No hit | No description |
| PROSITE profile | PS51294 | 11.674 | 191 | 250 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.97E-20 | 191 | 251 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 193 | 252 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.9E-25 | 194 | 247 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 6.7E-9 | 196 | 246 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 659 aa Download sequence Send to blast |
MSTVSDQFPV GLRVLVVDDD PTCLRILEKM LRNCHYQVTK CNRAEVALSL LRENKNGFDI 60 VISDVHMPDM DGFKLLEHIG LEMDLPVIMM SADDSKDVVM KGVTHGAYDY LIKPVRIEAL 120 KNIWQHVVRK KKHEWKDNNY DQSGSVEEGD RQQKLPEDAD YSSSANEGNW RNSKKRKEEE 180 EEAEERDDTA TLKKPRVVWS VELHQQFVQA VHQLGIDKAV PKKILELMNV PGLTRENVAS 240 HLQKYRLYLR RLSGVSQHQS SLNNSFMGRP DATFGTISSL NGLDLQAISA AGQVPAQSLA 300 TLQAAALGRS AATKSAISMP LVDQRNLFSF ENSKLRFPEG QQQLNNSNKQ IDLLHGIPTT 360 MEPKQLANLH HPSQSFVSMN TQVNSMAQHN NPLLLRMSQS QPRAQMLNGA NNGHQVSRLP 420 LSMQQPLSPE GIPGTVPAQS GIVDNARGSV YNPVSQSSSM VDFSLNQSKE LQSYNFSLGS 480 NNSGMPTLTN RGMLQEEMNS DIKGSRGFPS NYDMFNELHQ QKSQNWDLQN VGSTFDASHH 540 PSIQGTRGVS SQLLLQQGIS STHHSGQNRN APSGKPLYSN ADESGHFNPM GGPQLNSLGG 600 NMLAVKAERF SDSDYHSTIY HEQFGQEDLM SAFLKQQGNV GPVETEFGFD AYTLDNLPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-20 | 193 | 253 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016481338.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X2 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A1S4AXV8 | 0.0 | A0A1S4AXV8_TOBAC; Two-component response regulator | ||||
| STRING | XP_009801563.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3191 | 24 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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