PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481523.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 191aa    MW: 21880.4 Da    PI: 8.4264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-30110168159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+vk+ ++pr+YY+C+s gC+vkk+ver++ed ++v++tYeg Hnh+
  XP_016481523.1 110 LDDGFKWRKYGKKMVKNRPNPRNYYKCSSGGCNVKKRVERDNEDSSYVITTYEGIHNHQ 168
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3296170IPR003657WRKY domain
SuperFamilySSF1182901.57E-27103170IPR003657WRKY domain
PROSITE profilePS5081130.928105170IPR003657WRKY domain
SMARTSM007741.5E-33110169IPR003657WRKY domain
PfamPF031062.1E-23111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSSPLLSTME NFHYSNPNPN PNYGATDFIE TPEFELSDYL FPVDELSDDF LLQNEMTSEF  60
VQSISSSGSY SNPTPSSANN IKCTKGVKKY NKVDAKSRVA FRFKSDLDVL DDGFKWRKYG  120
KKMVKNRPNP RNYYKCSSGG CNVKKRVERD NEDSSYVITT YEGIHNHQSP SHVLHYTQFP  180
PKNIGLHNLR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24100171778Probable WRKY transcription factor 4
2lex_A3e-24100171778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481523.11e-141PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1S4AYF01e-140A0A1S4AYF0_TOBAC; probable WRKY transcription factor 50
STRINGXP_009629179.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-41WRKY DNA-binding protein 51