PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016481633.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 272aa MW: 30454 Da PI: 5.869

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016481633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	92	152	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e+++ l +++e++V++WFqNrRa+ k+ XP_016481633.1 92 RQRWTPTPMQLQILERIFDQgNGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRARSKR 152 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.7e-33	92	154	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+aR+++kq XP_016481633.1 92 RQRWTPTPMQLQILERIFDQGNGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQ 154 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-18	88	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.997	88	153	IPR001356	Homeobox domain
SMART	SM00389	1.1E-14	90	157	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-19	90	157	IPR009057	Homeodomain-like
CDD	cd00086	4.59E-14	92	154	No hit	No description
Pfam	PF00046	2.4E-19	92	152	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEWEKQQLPQ QPPQTAEEMG GGGGGGGMFV KVMTDEQMEV LRKQIAVYAT ICEQLVDLHK 60 SMASQHDLAG VRLGNLYCDP LVTSAGHKIT GRQRWTPTPM QLQILERIFD QGNGTPSKQK 120 IKEITSDLSQ HGQISETNVY NWFQNRRARS KRKQQVATTN NTESEVETEV ESSNEKKTRP 180 EDLQSPHMPT SRAEDVGYQN PEVSSGMHSL DPRTSKPEPV FPSEGTSKPA GSYGEMSFYG 240 MSNPRMDQLM GKMEVPGSYH PYLHAEDYNM TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	153	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215450	0.0	AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481633.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-85	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S4AYP3	0.0	A0A1S4AYP3_TOBAC; WUSCHEL-related homeobox 8-like
STRING	XP_009606331.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-80	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]